...not sure about the tap root going sideways, but I've heard of that happening before... it'd have to be waaaay too dry an inch or two down, or whatever the depth the root was when it went sideways; sometimes seeds just don't set, but if it's happened twice in a row, somethings most likely off with the germ'ing process and pot set up you follow. How deep do you sow the seeds? there are several ways to do germ'ing right, it's a personal choice really, I've tried several and none stand out above the others for success, folks just find what works for them... 2-3 days ahead of time, I like to set up their pots (generally I see no need to start in smaller pot with auto's, unless they're reg's ); mix up the soil with inoculants and moisten up well, then let them sit in normal grow temps while seeds soak and germ',... I put the seeds in shallow water (1/2" is fine) overnight, or until they sink (poke at floaters next morning, they may sink or need a bit more time)... Then make your hole with something narrow, I go 1cm or so deep (less than 1/2")... use forceps/tweezers to pick seed up and rest horizontally if possible, cover and tap lightly; it takes 2-4 days usually for them to start showing; I mist to keep surface consistently evenly moist... I don't cover them with bags or clear cups since the RH is in good range normally for me (about 50-60%) ... Some folks doing the paper towel method, in or out of a baggie, like to let the tap root get 1"+ long before planting; that's fine, but it risks damage to root,...
Transplanting is okay, but it's a learned skill to know when and do it without damage to roots, so if using fem's, why bother? little cups dry super fast too, so you'll see no improvement there with that,... CFL's are fine, if they have the right color spectrum, otherwise, use what does; they don't need the intensity at first either, so reduce that,...