Haven't used either, but rather than risk plugging issues, I would turn off the reservoir for a while to let the plans drink most or all of the nute liquid in the tray, then give them a top feed of the
same nute solution with the Myco added. You will want to get the Myco solution throughout the pots to make sure that you inoculate the whole thing, so I would apply enough of the nute/myco mix to get some runoff into the autopot tray. I would then let the plants drink that up, and turn the reservoir back on.
That is if you are talking about adding Myco once the reservoir is turned on, which as I recall yours is not yet. If you want to add it now, just top water with the same nute solution with the Myco added. Other than cost, I don't see any disadvantage in continuing with Myco mix until you turn on the reservoir, and doing so may make sure that early root development is well inoculated .
But, I haven't used the stuff, so pay attention to contrary opinion from those who have.